2014 / December / mRNAseq on semi-model organismsΒΆ
This workshop was given on December 10th and 11th, 2014, by C. Titus Brown and Matt Scholz.
What are semi-model organisms? One with bad transcriptomes.!
Tutorials:
- Semi-model organisms and RNAseq: an overview of the options
- Short read quality and trimming
- Building a new reference transcriptome
- Mapping reads to the transcriptome with TopHat
- Processing another sample with TopHat and HTSeq
- Using the HPC to run jobs in parallel
- Data analysis & differential expression
- Data analysis 2: more sequence fu
- Miscellaneous advice
- More resources
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